AIA29772.1 protein (Mycoplasma californicum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AIA29772.1

Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)

Predicted Functional Partners:

AIA29752.1

0.759

AIA29505.1

0.751

AIA29306.1

0.750

AIA29213.1

0.727

AIA29521.1

0.726

oppA

0.710

potD

0.687

lspA

0.677

AIA29652.1

0.674

AIA29243.1

0.662

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29213.1	AIA29306.1	MCFN_00170	MCFN_00705	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
AIA29213.1	AIA29505.1	MCFN_00170	MCFN_01820	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Putative oligopeptide ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.610
AIA29213.1	AIA29521.1	MCFN_00170	MCFN_01900	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.766
AIA29213.1	AIA29752.1	MCFN_00170	MCFN_03200	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein.	0.664
AIA29213.1	AIA29772.1	MCFN_00170	MCFN_03325	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
AIA29213.1	lspA	MCFN_00170	MCFN_01200	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
AIA29213.1	oppA	MCFN_00170	MCFN_00710	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligopeptide ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
AIA29213.1	potD	MCFN_00170	MCFN_00635	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
AIA29243.1	AIA29505.1	MCFN_00320	MCFN_01820	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Putative oligopeptide ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.732
AIA29243.1	AIA29752.1	MCFN_00320	MCFN_03200	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein.	0.718
AIA29243.1	AIA29772.1	MCFN_00320	MCFN_03325	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
AIA29306.1	AIA29213.1	MCFN_00705	MCFN_00170	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
AIA29306.1	AIA29505.1	MCFN_00705	MCFN_01820	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Putative oligopeptide ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.666
AIA29306.1	AIA29521.1	MCFN_00705	MCFN_01900	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.761
AIA29306.1	AIA29752.1	MCFN_00705	MCFN_03200	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein.	0.731
AIA29306.1	AIA29772.1	MCFN_00705	MCFN_03325	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
AIA29306.1	oppA	MCFN_00705	MCFN_00710	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligopeptide ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
AIA29306.1	potD	MCFN_00705	MCFN_00635	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
AIA29505.1	AIA29213.1	MCFN_01820	MCFN_00170	Putative oligopeptide ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
AIA29505.1	AIA29243.1	MCFN_01820	MCFN_00320	Putative oligopeptide ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.732