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MCFN_03355 protein (Mycoplasma californicum) - STRING interaction network
"MCFN_03355" - Uncharacterized protein in Mycoplasma californicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCFN_03355Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (407 aa)    
Predicted Functional Partners:
MCFN_03350
Transcription accessory protein TEX; Derived by automated computational analysis using gene prediction method- Protein Homology (713 aa)
              0.806
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (195 aa)
              0.610
dnaE
DNA-directed DNA polymerase; Catalyzes DNA-template-directed extension of the 3’-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria; Derived by automated computational analysis using gene prediction method- Protein Homology (969 aa)
              0.496
MCFN_03340
5’-3’ exonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
              0.496
MCFN_03335
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (80 aa)
              0.496
MCFN_03330
Lipoprotein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (751 aa)
              0.496
MCFN_03365
DNA methylase; Derived by automated computational analysis using gene prediction method- Protein Homology (182 aa)
              0.460
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, Mycoplasma californicum, NCTC 10189, strain ST-6
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