Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
defformylmethionyl-tRNA deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)    
Predicted Functional Partners:
tig
Peptidylprolyl isomerase (trigger factor); Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.866
rpsT
30S ribosomal protein S20; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.863
rplV
50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.856
rplQ
50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.849
rpmB
50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.833
rpsP
30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.832
rpmA
50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.831
rplU
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.828
rplI
50S ribosomal protein L9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.828
rpsF
30S ribosomal protein S6.
   
   0.827
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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