Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIA29780.1DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)    
Predicted Functional Partners:
def
formylmethionyl-tRNA deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.654
coaD
Phosphopantetheine adenylyltransferase; Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.582
AIA29781.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.479
AIA29777.1
Transcription accessory protein TEX; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.420
AIA29778.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.418
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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