STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIA29789.1DNA-binding regulatory protein, YebC/PmpR family; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)    
Predicted Functional Partners:
nadE
NH(3)-dependent NAD(+) synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.863
tyrS
tyrosyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.832
aspS
aspartyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.759
AIA29787.1
Hypothetical protein.
       0.674
AIA29786.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
AIA29205.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   0.439
pheT
phenylalanyl-tRNA synthetase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.439
metS
methionyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.417
rplS
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.414
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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