STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0002Glutathione uptake transporter. (516 aa)    
Predicted Functional Partners:
SO_1505
Proton:peptide symporter POT family.
  
  
 0.979
SO_1277
Proton:oligopeptide symporter POT family.
  
   
0.578
SO_2494
Peptidase family M2.
 
   
 0.537
mioC
Flavodoxin protein MioC.
       0.507
SO_0639
Collagenase.
  
     0.479
SO_3539
Peptidase M28D family.
 
   0.478
ybbP
Putative ABC-type fatty acid export system permease component YbbP.
      
 0.467
dinF
DNA damage-inducible multidrug and toxin efflux protein DinF.
    
 
 0.465
prrA
Two-component system, response regulator RegA; Oxygen-responsive two component signal transduction system controlling redox affected systems response regulator PrrA.
 
    0.454
SO_3918
Periplasmic peptidase subfamily S1B.
  
     0.452
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.