Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yigZPotassium uptake associated protein YigZ. (204 aa)    
Predicted Functional Partners:
pepQ
Xaa-Pro dipeptidase PepQ; Splits dipeptides with a prolyl residue in the C-terminal position.
  
    0.785
trkH
Potassium uptake transporter TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.
       0.607
hemG
Oxygen-independent protoporphyrinogen oxidase HemG.
  
    0.603
trmK
tRNA (adenine22-N1)-methyltransferase TrmK.
   
    0.513
SO_0366
P-loop containing nucleotide triphosphate hydrolase.
   
    0.429
corA
Divalent cation (Mg2+, Co2+, Ni2+) transporter CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
  
    0.402
SO_3984
Metal ion transporter MIT family.
  
    0.402
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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