Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0033Peptidoglycan-binding protein. (378 aa)    
Predicted Functional Partners:
pilQ
Type IV pilus secretin PilQ.
 
 
 
 0.966
SO_3888
Protein of unknown function DUF1508; Belongs to the UPF0339 family. Duplicated subfamily.
  
   0.926
gpJ
Mu phage baseplate assembly protein GpJ.
  
 
 0.918
pilO
Type IV pilus biogenesis protein PilO.
 
   0.904
pilM
Type IV pilus biogenesis protein PilM.
  
   0.903
pilN
Type IV pilus biogenesis protein PilN.
  
 
   0.901
smg
Protein of unknown function DUF494 Smg; Belongs to the Smg family.
 
    0.848
dprA
DNA processing protein DprA.
       0.816
pilP
PilQ chaperone PilP.
 
     0.777
SO_2611
c-di-GMP-binding protein.
  
    0.763
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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