STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0033Peptidoglycan-binding protein. (378 aa)    
Predicted Functional Partners:
pilQ
Type IV pilus secretin PilQ.
 
 
 
 0.979
SO_3888
Protein of unknown function DUF1508; Belongs to the UPF0339 family. Duplicated subfamily.
  
   0.972
gpJ
Mu phage baseplate assembly protein GpJ.
  
 
 0.959
pilO
Type IV pilus biogenesis protein PilO.
 
   0.900
pilM
Type IV pilus biogenesis protein PilM.
  
   0.899
pilP
PilQ chaperone PilP.
 
 
   0.899
pilN
Type IV pilus biogenesis protein PilN.
  
   0.898
smg
Protein of unknown function DUF494 Smg; Belongs to the Smg family.
 
    0.821
dprA
DNA processing protein DprA.
       0.781
SO_2611
c-di-GMP-binding protein.
  
    0.761
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.