Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SO_0033 | def | SO_0033 | SO_0032 | Peptidoglycan-binding protein. | Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.578 |
| SO_0033 | dprA | SO_0033 | SO_0034 | Peptidoglycan-binding protein. | DNA processing protein DprA. | 0.781 |
| SO_0033 | rsmB | SO_0033 | SO_0030 | Peptidoglycan-binding protein. | 16S rRNA (cytosine967-C5)-methyltransferase RsmB; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.594 |
| SO_0033 | smg | SO_0033 | SO_0035 | Peptidoglycan-binding protein. | Protein of unknown function DUF494 Smg; Belongs to the Smg family. | 0.821 |
| SO_0033 | yrdD | SO_0033 | SO_0036 | Peptidoglycan-binding protein. | Putative DNA topoisomerase YrdD. | 0.555 |
| SO_1175 | lptE | SO_1175 | SO_1173 | Protein of unknown function DUF1451. | OM lipoprotein component of lipopolysaccharide assembly complex chaperone LptE; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane. | 0.660 |
| SO_1175 | smg | SO_1175 | SO_0035 | Protein of unknown function DUF1451. | Protein of unknown function DUF494 Smg; Belongs to the Smg family. | 0.585 |
| SO_4093 | SO_4329 | SO_4093 | SO_4329 | TIGR02099 family protein. | Protein of unknown function DUF526. | 0.587 |
| SO_4093 | smg | SO_4093 | SO_0035 | TIGR02099 family protein. | Protein of unknown function DUF494 Smg; Belongs to the Smg family. | 0.573 |
| SO_4329 | SO_4093 | SO_4329 | SO_4093 | Protein of unknown function DUF526. | TIGR02099 family protein. | 0.587 |
| SO_4329 | smg | SO_4329 | SO_0035 | Protein of unknown function DUF526. | Protein of unknown function DUF494 Smg; Belongs to the Smg family. | 0.612 |
| def | SO_0033 | SO_0032 | SO_0033 | Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Peptidoglycan-binding protein. | 0.578 |
| def | dprA | SO_0032 | SO_0034 | Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | DNA processing protein DprA. | 0.584 |
| def | rsmB | SO_0032 | SO_0030 | Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 16S rRNA (cytosine967-C5)-methyltransferase RsmB; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.841 |
| def | smg | SO_0032 | SO_0035 | Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Protein of unknown function DUF494 Smg; Belongs to the Smg family. | 0.581 |
| def | yrdD | SO_0032 | SO_0036 | Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Putative DNA topoisomerase YrdD. | 0.438 |
| dprA | SO_0033 | SO_0034 | SO_0033 | DNA processing protein DprA. | Peptidoglycan-binding protein. | 0.781 |
| dprA | def | SO_0034 | SO_0032 | DNA processing protein DprA. | Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.584 |
| dprA | rsmB | SO_0034 | SO_0030 | DNA processing protein DprA. | 16S rRNA (cytosine967-C5)-methyltransferase RsmB; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.616 |
| dprA | smg | SO_0034 | SO_0035 | DNA processing protein DprA. | Protein of unknown function DUF494 Smg; Belongs to the Smg family. | 0.910 |
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