STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrdATrimeric LpxA-like enzyme YrdA. (182 aa)    
Predicted Functional Partners:
can
Beta-class carbonic anhydrase Can; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
    
 
 0.829
SO_2155
Glyoxalase family protein.
 
    0.732
yebR
Free methionine-R-sulfoxide reductase YebR.
      0.718
SO_1502
GTPase involved in metallocenter biosynthesis of metalloproteins COG0523 family.
  
  
 0.544
ygfZ
Folate-dependent protein involved in synthesis and repair of FeS clusters YgfZ; Belongs to the GcvT family.
      
 0.505
bipA
GTP-binding protein BipA.
     
 0.500
ppiC
Peptidyl-prolyl cis-trans isomerase PpiC.
   
  
 0.499
ppiD
Peptidyl-prolyl cis-trans isomerse PpiD.
   
  
 0.499
ppiC-2
Peptidyl-prolyl cis-trans isomerase PpiC.
   
  
 0.499
suhB
Inositol-phosphate phosphatase SuhB; Belongs to the inositol monophosphatase superfamily.
   
  
 0.461
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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