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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0048Predicted non-catalytic member of peptidase subfamily M23B. (377 aa)    
Predicted Functional Partners:
ftsX
ABC-type cell division-associated export system permease component FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 0.972
yibQ
Protein YibQ.
   
 0.862
SO_0047
Periplasmic C-terminal peptidase S41 family; Belongs to the peptidase S41A family.
 
  
 0.834
gpmA
2,3-bisphosphoglycerate-independent phosphoglycerate mutase GpmA; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.795
SO_1314
Family M23 zinc metallopeptidase with OapA domain.
 
  
 0.750
amiB
N-acetylmuramoyl-L-alanine amidase AmiB.
 
   
 0.747
yfgC
Periplasmic Zn-dependent protease YfgC; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state.
 
 
 
 0.662
ftsE
ABC-type cell division-associated export system ATPase component FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
  
 0.637
mcrA
Penicillin-binding protein 1A McrA.
  
     0.594
mshN
MSHA biogenesis protein MshN.
  
 
 0.552
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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