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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0056ABC-type transport system substrate binding component. (252 aa)    
Predicted Functional Partners:
SO_0055
Tetratricopeptide repeat-containing protein.
   
 
 0.782
SO_1143
Periplasmic substrate binding protein family 3.
  
    0.778
SO_3860
Periplasmic substrate binding protein family 3.
  
    0.761
SO_3412
Periplasmic solute binding protein.
  
     0.752
SO_1503
Periplasmic substrate binding protein family 3.
  
    0.738
SO_0047
Periplasmic C-terminal peptidase S41 family; Belongs to the peptidase S41A family.
   
 
 0.711
SO_0044
Protein of unknown function UPF0153.
   
  
 0.657
SO_0736
Predicted periplasmic protein.
  
    0.656
rimN
Threonylcarbamoyladenosine t(6)A tRNA modification protein RimN; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate.
      
 0.655
SO_0041
G-protein receptor interacting sweet protein.
      
 0.655
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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