STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ktrBSodium-dependent potassium uptake protein integral membrane component KtrB. (453 aa)    
Predicted Functional Partners:
ktrA
Sodium-dependent potassium uptake system NAD binding component KtrA.
 
 0.984
ktrA-2
Sodium-dependent potassium uptake system NAD binding component KtrA.
 
 0.951
kdpE
Two-component system, OmpR family, KDP operon response regulator KdpE; Two component signal transduction system controlling the osmosenstive K+ channel response regulator KdpE.
     
 0.787
kdpD
Two component signal transduction system controlling the osmosenstive K+ channel histidine kinase KdpD.
     
 0.664
SO_0056
ABC-type transport system substrate binding component.
      
 0.636
SO_0047
Periplasmic C-terminal peptidase S41 family; Belongs to the peptidase S41A family.
   
 
 0.603
SO_0695
Potassium efflux protein CPA2 family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.597
rimN
Threonylcarbamoyladenosine t(6)A tRNA modification protein RimN; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate.
  
  
 0.590
kvaP
Voltage-gated potassium uptake system KvaP.
 
 
 0.586
yhiN
HI0933 family flavoprotein YhiN.
  
  
 0.583
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.