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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ktrASodium-dependent potassium uptake system NAD binding component KtrA. (232 aa)    
Predicted Functional Partners:
ktrB
Sodium-dependent potassium uptake protein integral membrane component KtrB.
 
 0.984
ktrB-2
Sodium-dependent potassium uptake system permease component KtrB.
 
 0.938
kdpD
Two component signal transduction system controlling the osmosenstive K+ channel histidine kinase KdpD.
  
  
 0.665
kdpE
Two-component system, OmpR family, KDP operon response regulator KdpE; Two component signal transduction system controlling the osmosenstive K+ channel response regulator KdpE.
       0.631
rsmB
16S rRNA (cytosine967-C5)-methyltransferase RsmB; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.589
moaE
Molybdenum cofactor biosynthesis protein E MoaE.
   
    0.587
SO_3692
ABC-type macrolide family export system ATPase component.
   
 
 0.557
SO_1917
Major facilitator superfamily transporter required for growth on DMSO MFS superfamily.
   
  
 0.519
SO_1918
Multidrug and toxin efflux protein MATE family.
  
  
 0.516
SO_2523
TonB-dependent phytase receptor.
   
  
 0.516
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.