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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nlpCFamily C40 peptidase lipoprotein NlpC. (154 aa)    
Predicted Functional Partners:
SO_1365
Predicted membrane protein.
   
    0.608
cysE
Serine acetyltransferase CysE.
     
 0.553
amiB
N-acetylmuramoyl-L-alanine amidase AmiB.
  
  
 0.492
SO_1502
GTPase involved in metallocenter biosynthesis of metalloproteins COG0523 family.
 
 
    0.474
SO_1994
Membrane-bound lytic transglycosylase MltB_2 family.
  
  
 0.467
kdpD
Two component signal transduction system controlling the osmosenstive K+ channel histidine kinase KdpD.
  
  
 0.462
rnt
Ribonuclease T Rnt; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
     
 0.452
J
Lambda phage tail fiber protein J.
  
    0.452
flgJ
Flagellar rod cap protein and peptidoglycan hydrolase FlgJ.
     
 0.452
kdpE
Two-component system, OmpR family, KDP operon response regulator KdpE; Two component signal transduction system controlling the osmosenstive K+ channel response regulator KdpE.
     
 0.443
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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