STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
natAABC-type sodium efflux system ATPase component NatA. (244 aa)    
Predicted Functional Partners:
natB
ABC-type sodium efflux system permease component NatB.
 
 
 0.993
SO_0071
Hydrolase alpha/beta hydrolase fold family.
 
     0.921
SO_1707
ABC-type drugE1 family efflux system permease component.
     0.916
sapD
ABC-type peptide uptake system ATPase component 1 SapD; Belongs to the ABC transporter superfamily.
 
    
0.856
SO_0072
Transcriptional repressor of ABC-type efflux system GntR family.
 
     0.660
ybbA
Putative ABC-type fatty acid export system ATPase component YbbA.
 
    
0.644
SO_0073
ABC-type efflux system ATPase component.
 
    
0.594
rpsK
30S ribosomal protein S11 RpsK; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.531
SO_3692
ABC-type macrolide family export system ATPase component.
 
    
0.518
SO_0074
ABC-type efflux system permease component.
  
    0.504
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.