STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0071Hydrolase alpha/beta hydrolase fold family. (539 aa)    
Predicted Functional Partners:
natA
ABC-type sodium efflux system ATPase component NatA.
 
     0.933
natB
ABC-type sodium efflux system permease component NatB.
 
    0.916
SO_0072
Transcriptional repressor of ABC-type efflux system GntR family.
 
    0.613
SO_0074
ABC-type efflux system permease component.
       0.574
SO_0073
ABC-type efflux system ATPase component.
  
    0.561
apaH
Bis(5-nucleosyl)-tetraphosphatase ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.467
SO_0150
Putative adhesin.
  
    0.449
SO_1944
2OG-Fe(II) oxygenase family protein.
  
     0.444
SO_0068
Phage shock protein B family protein.
       0.424
nupC
Na-dependent nicotinamide ribose transporter NupC.
   
    0.413
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.