Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
SO_0072Transcriptional repressor of ABC-type efflux system GntR family. (123 aa)    
Predicted Functional Partners:
SO_0073
ABC-type efflux system ATPase component.
 
  
 0.874
SO_0074
ABC-type efflux system permease component.
       0.675
natA
ABC-type sodium efflux system ATPase component NatA.
 
     0.651
SO_0071
Hydrolase alpha/beta hydrolase fold family.
 
    0.613
SO_3346
Protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family.
   
    0.574
natB
ABC-type sodium efflux system permease component NatB.
  
    0.452
cobB
Deacetylase of acetyl-CoA synthetase NAD-dependent CobB; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form.
  
    0.446
icfE
long-chain-fatty-acid--CoA ligase IcfE.
       0.418
SO_0734
Transcriptional repressor PadR family.
  
    0.415
hutC
Transcriptional repressor of histidine utilization genes HutC.
 
  
 0.401
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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