STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0079Acetyltransferase. (88 aa)    
Predicted Functional Partners:
SO_0768
NAD dependent epimerase/dehydratase family protein.
   
    0.690
SO_0080
acyl-CoA thioester hydrolase, YbgC/YbaW family.
  
    0.675
yfcH
Predicted nucleoside-diphosphate sugar epimerase YfcH.
  
    0.643
rpiA
Ribose 5-phosphate isomerase RpiA; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
    0.640
SO_0078
Predicted lipoprotein.
       0.634
yqhD
NADP-dependent alcohol dehydrogenase iron-containing YqhD.
   
    0.604
SO_3933
Transport protein MFS superfamily.
  
     0.470
SO_4589
Transcriptional regulator AraC family.
   
    0.465
SO_2792
Protein of unknown function DUF1289.
  
    0.451
SO_1887
DJ-1/PfpI family protein.
   
    0.436
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.