STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0079Acetyltransferase. (88 aa)    
Predicted Functional Partners:
SO_0080
acyl-CoA thioester hydrolase, YbgC/YbaW family.
  
    0.659
SO_0078
Predicted lipoprotein.
       0.634
rpiA
Ribose 5-phosphate isomerase RpiA; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
    0.633
SO_3933
Transport protein MFS superfamily.
  
     0.470
SO_2792
Protein of unknown function DUF1289.
  
    0.447
gfaB
Glutathione-dependent formaldehyde-activating enzyme GfaB.
  
    0.442
SO_0082
Transcriptional activator of benzoate metabolism.
  
    0.430
yagK
Protein of unknown function DUF3296 YagK.
   
    0.413
yitL
Nucleic acid binding superfamily protein YitL type; Belongs to the CvfB family.
 
     0.400
vexB
RND-type multidrug/detergent efflux system MFP component VexB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.400
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.