STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0080acyl-CoA thioester hydrolase, YbgC/YbaW family. (142 aa)    
Predicted Functional Partners:
pfaA
Omega-3 polyunsaturated fatty acid synthase subunit PfaA.
  
 
 0.829
SO_0079
Acetyltransferase.
  
    0.675
pfaC
Multi-domain beta-ketoacyl synthase PfaC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.573
SO_0082
Transcriptional activator of benzoate metabolism.
  
    0.556
gfaB
Glutathione-dependent formaldehyde-activating enzyme GfaB.
  
    0.542
pfaB
Omega-3 polyunsaturated fatty acid synthase PfaB.
   
 
 0.502
fabD
Malonyl CoA-acyl carrier protein transacylase FabD.
  
 
 0.498
SO_0078
Predicted lipoprotein.
       0.492
SO_0083
Carboxymuconolactone decarboxylase family protein.
 
     0.409
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.