Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
yedEMembrane protein of unknown function DUF395 YedE. (404 aa)    
Predicted Functional Partners:
yedF
SirA family protein YedF; Belongs to the sulfur carrier protein TusA family.
 
  
 0.993
ychN
Protein YchN.
 
    0.725
arsP
Permease of unknown function DUF318 ArsP.
      
 0.664
serB
Phosphoserine phosphatase SerB.
      
 0.661
selB
Selenocysteine-specific translation elongation factor SelB.
 
  
 0.650
fdnI
Nitrate-inducible formate dehydrogenase cytochrome b subunit FdnI.
 
    0.632
selA
L-seryl-tRNA selenium transferase SelA; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.617
SO_3047
Protein of unknown function DUF1097.
  
     0.595
fdhD
Formate dehydrogenase assembly/maturation protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
  
    0.573
SO_3771
Inorganic phosphate transporter PiT family.
   
  
 0.505
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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