STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0123Acyltransferase family protein. (186 aa)    
Predicted Functional Partners:
SO_0122
Putative amino acid efflux permease RhtB family.
  
    0.701
SO_0355
AMP-dependent synthetase and ligase family protein.
    
 0.546
SO_0125
Periplasmic L-asparaginase family protein.
  
    0.535
accADCB
acetyl-CoA carboxylase multifunctional enzyme AccADCB.
     
 0.489
SO_2118
Chemotaxis locus anti-sigma factor antagonist.
   
    0.443
SO_3298
Outer membrane beta barrel protein.
   
    0.443
deoT
Nucleoside sugar transporter DeoT.
   
    0.429
SO_3758
Sodium-dependent bicarbonate transporter (SBT) family.
   
    0.429
pyrD
Dihydroorotate dehydrogenase PyrD; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
   
    0.412
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.