STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0125Periplasmic L-asparaginase family protein. (149 aa)    
Predicted Functional Partners:
iaaA
Bifunctional isoaspartyl dipeptidase / l-asparaginase IaaA.
 
    0.708
SO_3148
Periplasmic amidohydrolase family protein.
  
    0.676
SO_3149
Periplasmic amidohydrolase family protein.
  
    0.674
SO_1157
Membrane protein of unknown function DUF1624.
  
    0.620
kdnB
Alcohol dehydrogenase iron-containing; Catalyzes the first step of the biosynthesis of Kdo8N (8- amino-3,8-dideoxy-D-manno-octulosonate) from Kdo (3-deoxy-D-manno- octulosonate).
  
     0.536
SO_0123
Acyltransferase family protein.
  
    0.535
SO_2766
Peptidase M28A family.
  
     0.517
SO_2198
Peptidase M28 family.
  
     0.486
SO_0122
Putative amino acid efflux permease RhtB family.
       0.484
SO_3539
Peptidase M28D family.
  
    0.479
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.