Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
prtVExtracellular metalloprotease PrtV. (935 aa)    
Predicted Functional Partners:
SO_4385
Von Willebrand factor type A domain protein.
      
 0.801
gbpA
N-acetylglucosamine-binding protein A GbpA; Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin. Belongs to the GbpA family.
  
   
 0.746
azu
Periplasmic azurin Azu; Transfers electrons from cytochrome c551 to cytochrome oxidase.
   
  
 0.738
sapSH
Extracellular serine alkaline protease SapSH.
 
  
 0.700
chiA
Chitinase ChiA.
  
  
 0.623
SO_2504
Rhombosortase.
 
   
 0.541
pepO
Cell surface zinc endopeptidase PepO.
   
  
 0.516
SO_1000
Rhomboid protease.
     
 0.516
pepO-2
Thermoregulated outer membrane M13 family zinc endopeptidase PepO.
   
  
 0.516
deoA
Thymidine phosphorylase DeoA; The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family.
   
    0.509
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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