STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prtVExtracellular metalloprotease PrtV. (935 aa)    
Predicted Functional Partners:
sapSH
Extracellular serine alkaline protease SapSH.
 
  
 0.747
SO_4385
Von Willebrand factor type A domain protein.
      
 0.734
azu
Periplasmic azurin Azu; Transfers electrons from cytochrome c551 to cytochrome oxidase.
   
  
 0.722
gbpA
N-acetylglucosamine-binding protein A GbpA; Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin. Belongs to the GbpA family.
  
   
 0.657
SO_1000
Rhomboid protease.
     
 0.653
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
 
  
0.577
SO_2504
Rhombosortase.
 
  
 0.564
SO_0639
Collagenase.
  
  
 0.515
pepO
Cell surface zinc endopeptidase PepO.
   
  
 0.514
pepO-2
Thermoregulated outer membrane M13 family zinc endopeptidase PepO.
   
  
 0.514
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.