Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SO_0136Membrane protein of unknown function UPF0005 family; Belongs to the BI1 family. (220 aa)    
Predicted Functional Partners:
SO_0135
Lipoprotein of unknown function DUF333.
  
    0.700
moeB
Molybdopterin/tungstopterin synthase sulfurylase MoeB.
    
  0.647
moeA
Molybdenum cofactor biosynthesis protein MoeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
       0.612
SO_3615
TPR repeat-containing protein.
   
    0.602
argE
N-acetyl-L-ornithine deacetylase ArgE.
 
     0.593
tnpA-107
ISSod12 transposase TnpA_ISSod12.
  
     0.578
tnpA-85
ISSod12 transposase TnpA_ISSod12.
  
     0.577
ompK
Nucleoside-specific outer membrane porin OmpK.
  
     0.565
SO_2192
Two component signal transduction system controlling sortase system histidine kinase.
  
     0.540
selR
methionine-R-sulfoxide reductase SelR; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
   0.508
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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