STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ftnFerritin Ftn; Iron-storage protein. (178 aa)    
Predicted Functional Partners:
dpsA
DNA-binding ferritin-like protein (oxidative damage protectant) DpsA; Belongs to the Dps family.
      
 0.698
SO_2280
drug:H+ antiporter DHA1 family.
      
 0.695
SO_1580
TonB-dependent haem/haemoglobin receptor.
      
 0.693
tusE
tRNA 2-thiouridine synthesizing protein sulfur mediator TusE; Part of a sulfur-relay system.
      
 0.668
SO_4516
TonB-dependent siderophore receptor.
   
  
 0.666
SO_4743
TonB-dependent siderophore receptor.
      
 0.662
SO_3062
Predicted inner membrane protein.
      
 0.661
SO_3025
Periplasmic siderophore cleavage esterase IroE family.
      
 0.605
ahpC
Alkyl hydroperoxide reductase peroxiredoxin component AhpC; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.576
tsaA
Peroxiredoxin TsaA.
  
  
 0.576
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.