Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_0141Nitrate/nitrite-responsive bifunctional diguanylate cyclase/phosphodiesterase with PAS sensory domain. (1077 aa)    
Predicted Functional Partners:
SO_0859
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
 
 
 0.871
SO_3759
Diguanylate cyclase with GAF sensory domain.
 
0.868
SO_4324
Bifunctional diguanylate cyclase/phosphodiesterase with GAF sensory domain.
 
 
 
0.864
barA
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA.
 
 
 0.846
SO_4002
Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
 
 
 0.836
SO_2520
Signalling protein with GGDEF domain.
 
 
 0.792
SO_4734
Bifunctional diguanylate cyclase/phosphodiesterase with PAS sensory domain.
 
 
0.770
SO_2498
Bifunctional diguanylate cyclase/phosphodiesterase with GAF and PAS sensory domains.
 
 
0.764
SO_4323
Bifunctional diguanylate cyclase/phosphodiesterase LasD-like protein.
 
 
0.750
SO_1055
Diguanylate cyclase with PAS and GAF sensory domains.
 
 
0.746
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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