STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0152Peptidase M14 carboxypeptidase A family. (663 aa)    
Predicted Functional Partners:
SO_1310
Serine peptidase S9 family.
  
    0.668
dpp4
Periplasmic dipeptidylpeptidase IV Dpp4.
 
    0.650
SO_3828
Protein of unknown function DUF819.
  
    0.536
SO_1751
ABC-type transport system bifunctional permease and peptidase M1 family component.
  
   
 0.534
SO_0154
Inner membrane protein of unknown function DUF893.
       0.491
SO_3539
Peptidase M28D family.
  
  
 0.441
SO_1224
Esterase/lipase/thioesterase family protein.
  
    0.424
SO_2900
Carbohydrate binding outer membrane protein.
  
    0.423
SO_0749
Phosphoglycerate mutase family protein.
  
  
  0.407
SO_0066
YfhM family alpha2-macroglobulin.
    
 0.404
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.