Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SO_0152Peptidase M14 carboxypeptidase A family. (663 aa)    
Predicted Functional Partners:
SO_1310
Serine peptidase S9 family.
  
    0.663
dpp4
Periplasmic dipeptidylpeptidase IV Dpp4.
 
     0.649
SO_3828
Protein of unknown function DUF819.
  
    0.533
SO_1751
ABC-type transport system bifunctional permease and peptidase M1 family component.
  
     0.529
SO_0154
Inner membrane protein of unknown function DUF893.
       0.491
SO_3539
Peptidase M28D family.
  
    0.446
SO_1224
Esterase/lipase/thioesterase family protein.
  
   0.433
SO_2900
Carbohydrate binding outer membrane protein.
  
    0.421
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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