Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gspIT2aSS secretion system pseudopilus protein GspI. (122 aa)    
Predicted Functional Partners:
gspJ
T2aSS secretion system protein GspJ.
 
 
 0.999
gspK
T2aSS secretion system pseudopilus protein GspK.
 
 
 0.999
gspH
T2aSS secretion system pseudopilus protein GspH.
 
  
 0.998
gspG
T2aSS secretion system pseudopilus protein GspG.
 
  
 0.997
gspL
T2aSSsecretion system inner membrane platform protein GspL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.990
gspF
T2aSS secretion system inner membrane platform protein GspF.
 
  
 0.984
gspC
T2aSS secretion system protein GspC.
 
  
 0.983
gspE
T2aSS secretion system assembly ATPase GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.979
gspM
T2aSS secretion system inner membrane platform protein GspM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.979
gspD
T2aSS secretion system secretin GspD.
 
  
 0.966
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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