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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0179Aspartyl/asparaginyl beta-hydroxylase family protein. (210 aa)    
Predicted Functional Partners:
phyH
phytanoyl-CoA dioxygenase PhyH.
    0.953
SO_0181
Uncharacterized protein.
 
    0.868
SO_0186
Microcystin dependent MdpB family protein.
  
     0.720
SO_0185
Microcystin dependent MdpB family protein.
  
     0.718
SO_0184
Microcystin dependent MdpB family protein.
  
     0.716
SO_0183
Acteyltransferase GNAT family.
 
     0.630
SO_4330
Uncharacterized protein.
   
    0.608
yrfG
HAD-superfamily hydrolase subfamily IA variant 3 protein family YrfG.
  
    0.555
SO_0182
Uncharacterized protein.
       0.511
SO_1843
Predicted membrane anchored protein.
  
     0.463
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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