phyH protein (Shewanella oneidensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

phyH

phytanoyl-CoA dioxygenase PhyH. (669 aa)

Predicted Functional Partners:

SO_0181

0.993

aaiD

0.964

SO_0179

0.953

cysT

0.799

SO_3656

0.752

SO_0400

0.685

SO_0841

0.668

SO_3660

0.666

SO_3662

0.665

gpN

0.649

Your Current Organism:

Shewanella oneidensis

NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SO_0179	SO_0181	SO_0179	SO_0181	Aspartyl/asparaginyl beta-hydroxylase family protein.	Uncharacterized protein.	0.869
SO_0179	phyH	SO_0179	SO_0180	Aspartyl/asparaginyl beta-hydroxylase family protein.	phytanoyl-CoA dioxygenase PhyH.	0.953
SO_0181	SO_0179	SO_0181	SO_0179	Uncharacterized protein.	Aspartyl/asparaginyl beta-hydroxylase family protein.	0.869
SO_0181	SO_0400	SO_0181	SO_0400	Uncharacterized protein.	Putative quinol monooxygenase.	0.962
SO_0181	SO_0841	SO_0181	SO_0841	Uncharacterized protein.	Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase.	0.959
SO_0181	SO_3656	SO_0181	SO_3656	Uncharacterized protein.	Protein of unknown function DUF3144.	0.666
SO_0181	SO_3660	SO_0181	SO_3660	Uncharacterized protein.	Sigma54-dependent transcriptional regulator with PAS sensory domain Fis family.	0.950
SO_0181	SO_3662	SO_0181	SO_3662	Uncharacterized protein.	Inner membrane 4Fe-4S ferredoxin.	0.951
SO_0181	cysT	SO_0181	SO_3600	Uncharacterized protein.	ABC-type sulfate/thiosulfate uptake system permease component 1 CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.704
SO_0181	phyH	SO_0181	SO_0180	Uncharacterized protein.	phytanoyl-CoA dioxygenase PhyH.	0.993
SO_0400	SO_0181	SO_0400	SO_0181	Putative quinol monooxygenase.	Uncharacterized protein.	0.962
SO_0400	SO_0841	SO_0400	SO_0841	Putative quinol monooxygenase.	Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase.	0.959
SO_0400	SO_3656	SO_0400	SO_3656	Putative quinol monooxygenase.	Protein of unknown function DUF3144.	0.668
SO_0400	SO_3660	SO_0400	SO_3660	Putative quinol monooxygenase.	Sigma54-dependent transcriptional regulator with PAS sensory domain Fis family.	0.955
SO_0400	SO_3662	SO_0400	SO_3662	Putative quinol monooxygenase.	Inner membrane 4Fe-4S ferredoxin.	0.951
SO_0400	cysT	SO_0400	SO_3600	Putative quinol monooxygenase.	ABC-type sulfate/thiosulfate uptake system permease component 1 CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.699
SO_0400	phyH	SO_0400	SO_0180	Putative quinol monooxygenase.	phytanoyl-CoA dioxygenase PhyH.	0.685
SO_0841	SO_0181	SO_0841	SO_0181	Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase.	Uncharacterized protein.	0.959
SO_0841	SO_0400	SO_0841	SO_0400	Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase.	Putative quinol monooxygenase.	0.959
SO_0841	SO_3656	SO_0841	SO_3656	Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase.	Protein of unknown function DUF3144.	0.668

page 1 of 4

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2026

Credits

Access

Info

About