Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0181Uncharacterized protein. (375 aa)    
Predicted Functional Partners:
phyH
phytanoyl-CoA dioxygenase PhyH.
  
  
 0.993
SO_0400
Putative quinol monooxygenase.
  
  
 0.962
SO_0841
Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase.
  
  
 0.959
SO_3662
Inner membrane 4Fe-4S ferredoxin.
  
  
 0.951
SO_3660
Sigma54-dependent transcriptional regulator with PAS sensory domain Fis family.
      
 0.950
SO_0179
Aspartyl/asparaginyl beta-hydroxylase family protein.
 
    0.869
cysT
ABC-type sulfate/thiosulfate uptake system permease component 1 CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
  
 0.704
SO_3656
Protein of unknown function DUF3144.
      
 0.666
hutC
Transcriptional repressor of histidine utilization genes HutC.
  
  
 0.617
yrfG
HAD-superfamily hydrolase subfamily IA variant 3 protein family YrfG.
  
    0.546
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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