Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0188TIGR03032 family protein. (363 aa)    
Predicted Functional Partners:
SO_0187
Peptidase subtilase family.
 
    0.830
SO_0189
Bifunctional autotransporter / adhesin cadherin family.
  
    0.778
SO_0186
Microcystin dependent MdpB family protein.
 
    0.728
SO_1534
Alpha/beta-hydrolase superfamily protein.
    
 0.715
SO_0185
Microcystin dependent MdpB family protein.
 
     0.683
SO_0183
Acteyltransferase GNAT family.
 
     0.637
SO_0184
Microcystin dependent MdpB family protein.
 
     0.619
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
  
    0.415
nudE
ADP compounds hydrolase NudE.
       0.410
csgG
Curli secretion apparatus outer membrane lipoprotein component CsgG.
   
    0.404
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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