STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0188TIGR03032 family protein. (363 aa)    
Predicted Functional Partners:
SO_1534
Alpha/beta-hydrolase superfamily protein.
    
 0.833
SO_0187
Peptidase subtilase family.
 
    0.830
SO_0189
Bifunctional autotransporter / adhesin cadherin family.
  
    0.757
SO_0186
Microcystin dependent MdpB family protein.
 
    0.729
SO_0185
Microcystin dependent MdpB family protein.
 
    0.686
SO_0183
Acteyltransferase GNAT family.
 
     0.637
SO_0184
Microcystin dependent MdpB family protein.
 
    0.622
SO_3083
Zn-dependent peptidase subfamily M16A; Belongs to the peptidase M16 family.
   
    0.453
kdkA
3-deoxy-D-manno-oct-2-ulosonic acid (KDO) kinase KdkA; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
   
 0.443
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
  
    0.416
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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