STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0189Bifunctional autotransporter / adhesin cadherin family. (2522 aa)    
Predicted Functional Partners:
SO_0187
Peptidase subtilase family.
 
   0.815
SO_0188
TIGR03032 family protein.
  
    0.778
sapSH
Extracellular serine alkaline protease SapSH.
 
 
 0.753
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
  
 
 0.743
SO_0186
Microcystin dependent MdpB family protein.
 
    0.702
SO_0185
Microcystin dependent MdpB family protein.
 
    0.662
gpN
Mu phage DNA circulation protein GpN.
  
     0.615
SO_0184
Microcystin dependent MdpB family protein.
 
    0.605
gpJ
Mu phage baseplate assembly protein GpJ.
 
 
   0.602
bpfA
Biofilm-promoting protein BpfA.
 
 
 0.593
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.