Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_0269Cytochrome c-type biogenesis thioredoxin. (194 aa)    
Predicted Functional Partners:
ccmH
Cytochrome c synthetase subunit CcmH; Possible subunit of a heme lyase.
  
  
 0.972
selR
methionine-R-sulfoxide reductase SelR; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.923
ccmF
Cytochrome c synthetase cytochrome b containing quinol-haem oxidoreductase subunit CcmF.
  
  
 0.919
ccmG
Cytochrome c maturation system membrane anchored thioredoxin CcmG.
 
  
0.874
sirE
Cytochrome c maturation system haem lyase subunit SirE.
  
  
 0.853
ccmI
Apo-cytochrome c chaperone CcmI.
  
  
 0.788
senC
Cytochrome c oxidase biogenesis protein SenC.
 
 
 0.749
SO_3117
Thioredoxin.
  
     0.710
hisA
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA.
     
 0.668
dsbD
Protein-disulfide reductase DsbD; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily.
  
 
 0.575
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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