STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0273Lipoprotein of unknown function DUF1439. (181 aa)    
Predicted Functional Partners:
ppc
Phosphoenolpyruvate carboxylase Ppc; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
 
    0.813
SO_0497
Serine/threonine protein kinase.
  
     0.659
SO_3811
Family 16 outer membrane lipoprotein of unknown function.
  
     0.651
yihI
GAP-like protein YihI; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
     0.635
SO_2251
Enzyme of unknown function UPF0227; Belongs to the UPF0227 family.
  
     0.619
ybfE
Ribbon-helix-helix protein repressor CopG family YbfE.
  
     0.598
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
     0.590
SO_0312
Outer membrane porin.
  
     0.587
SO_2201
Protein of unknown function DUF413.
  
     0.572
SO_3060
Outer membrane porin.
  
     0.563
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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