STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilOType IV pilus biogenesis protein PilO. (206 aa)    
Predicted Functional Partners:
pilN
Type IV pilus biogenesis protein PilN.
 
 
 0.999
pilP
PilQ chaperone PilP.
 
  
 0.999
pilQ
Type IV pilus secretin PilQ.
 
 
 0.999
pilM
Type IV pilus biogenesis protein PilM.
 
 
 0.998
pilF
Outer membrane PilQ pilotin PilF.
  
   
 0.970
pilC
Type IV pilus inner membrane protein PilC.
 
 
 
 0.929
pilT
Pilus retraction protein PilT.
 
  
 0.928
pilD
Type IV prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.912
SO_0033
Peptidoglycan-binding protein.
 
   0.904
pilV
Type IV pilin modification protein PilV.
 
   
 0.895
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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