STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0308Inner membrane protein of unknown function DUF1212. (406 aa)    
Predicted Functional Partners:
SO_4402
Uncharacterized protein.
  
     0.588
SO_2192
Two component signal transduction system controlling sortase system histidine kinase.
  
    0.543
SO_0306
Outer membrane protein COG4775 family.
 
     0.540
SO_0309
Membrane protein MAPEG superfamily.
       0.521
SO_1478
TP-methylase family protein.
 
     0.482
ptsG
Phosphotransferase system (PTS) glucose-specific IIBC component PtsG.
      
 0.446
SO_1944
2OG-Fe(II) oxygenase family protein.
  
     0.432
SO_1306
Protein of unknown function DUF2750.
  
     0.428
pepQ
Xaa-Pro dipeptidase PepQ; Splits dipeptides with a prolyl residue in the C-terminal position.
 
     0.424
prlS
Proline-responsive two component signal transduction system hybrid histidine kinase/resposne regulator PrlS.
 
 
   0.424
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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