STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0312Outer membrane porin. (384 aa)    
Predicted Functional Partners:
SO_1821
Outer membrane porin.
  
  
 
0.913
SO_3060
Outer membrane porin.
  
 
0.908
hptA
Histidine-containing phosphotransfer domain protein HptA.
  
   
 0.848
SO_4635
Chemotaxis signal transduction system methyl accepting sensory transducer.
   
  
 0.814
zapC
Protein of unknown function DUF1379; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.734
SO_3811
Family 16 outer membrane lipoprotein of unknown function.
  
     0.717
SO_0835
Putative periplasmic peptidase C15 superfamily.
  
     0.702
mlaA
Phospholipid transport-associated protein MlaA.
   
 
 0.697
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
    0.687
SO_1148
Endonuclease/exonuclease/phosphatase family protein.
  
    0.685
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.