STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0320Inner membrane acyl transferase family 3 protein. (345 aa)    
Predicted Functional Partners:
SO_0319
Protein of unknown function DUF1232.
  
    0.779
SO_0321
Putative periplasmic protein of unknown function.
  
    0.573
gp48
Mu phage phage morphogenesis protein Gp48.
  
     0.485
SO_0318
Protein of unknown function DUF1232.
       0.465
SO_4323
Bifunctional diguanylate cyclase/phosphodiesterase LasD-like protein.
 
    0.448
gpN
Mu phage DNA circulation protein GpN.
  
    0.439
SO_2538
Two component signal transduction system response regulator.
  
     0.434
gpP
Mu phage baseplate assembly protein GpP.
  
     0.432
gpL
Mu phage tail sheath protein GpL.
  
     0.430
SO_2541
Two component signal transduction system response regulator.
  
     0.418
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.