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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0323Predicted membrane protein. (310 aa)    
Predicted Functional Partners:
icd
Isocitrate dehydrogenase NADP-dependent Icd; Belongs to the monomeric-type IDH family.
      
 0.712
pgi
Glucose-6-phosphate isomerase Pgi.
      
 0.712
ygbA
Nitrosative stress induced protein YgbA.
       0.608
ndh
Respiratory NADH dehydrogenase II Ndh.
      
 0.607
aceE
Pyruvate dehydrogenase E1 component AceE; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
      
 0.574
SO_0760
Ammonium transporter channel family protein.
      
 0.566
wbpQ
Asparagine synthase glutamine-hydrolyzing WbpQ.
      
 0.565
tnpA-139
ISSod23 transposase TnpA_ISSod23.
      
 0.565
ppc
Phosphoenolpyruvate carboxylase Ppc; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
      
 0.563
assT
Arylsulfate sulfotransferase AssT.
      
 0.509
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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