STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ychNProtein YchN. (119 aa)    
Predicted Functional Partners:
tusC
tRNA 2-thiouridine synthesizing protein C subunit TusC; Belongs to the DsrF/TusC family.
  
 
 0.906
yedF
SirA family protein YedF; Belongs to the sulfur carrier protein TusA family.
 
  
 0.858
tusB
tRNA 2-thiouridine synthesizing protein B subunit TusB.
  
 
 0.857
yedE
Membrane protein of unknown function DUF395 YedE.
 
    0.725
tusA
tRNA 2-thiouridine synthesizing protein TusA; Sulfur carrier protein which probably makes part of a sulfur- relay system; Belongs to the sulfur carrier protein TusA family.
 
  
 0.617
ygbA
Nitrosative stress induced protein YgbA.
 
    0.596
SO_3047
Protein of unknown function DUF1097.
  
     0.586
SO_2868
SirA-like protein; Belongs to the sulfur carrier protein TusA family.
  
  
 0.567
H
Lambda phage tail length tape meausure protein H.
  
     0.520
ttrS
Thiosulfate/tetrathionate-responsive two component signal transduction system histidine kinase TtrS.
  
    0.470
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.