STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rdoASerine/threonine protein kinase RdoA; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response. (345 aa)    
Predicted Functional Partners:
dsbA
Periplasmic thiol:disulfide interchange protein DsbA.
 
  
 0.944
SO_4002
Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
  
  
 0.641
SO_0331
Protein of unknown function DUF3630.
       0.639
selO
Uncharacterized protein UPF0061 family; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation).
     
 0.628
SO_1387
HD domain protein.
   
    0.602
SO_0329
Predicted lipoprotein.
       0.570
SO_1381
Alkyl hydroperoxide reductase/ thiol specific antioxidant family protein.
   
    0.511
nrfJ
Periplasmic protein of unknown function NrfJ.
  
     0.474
modE
Transcriptional repressor of molybdate and molybdenium cofactor metabolism ModE.
     
 0.431
yrdD
Putative DNA topoisomerase YrdD.
   
    0.413
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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