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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yrbGSodium:calcium antiporter CaCA family YrbG. (316 aa)    
Predicted Functional Partners:
kdsD
Arabinose-5-phosphate isomerase KdsD.
    
 0.799
holD
DNA polymerase III psi subunit HolD.
   
    0.785
kdsC
3-deoxy-manno-octulosonate-8-phosphatase KdsC; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
 
  
 0.778
SO_0355
AMP-dependent synthetase and ligase family protein.
  
    0.470
SO_0353
TPR domain protein.
       0.453
SO_4527
10 TMS drug/metabolite efflux pump (DME) family.
   
    0.442
fklB-4
Peptidyl-prolyl cis-trans isomerase FklB.
  
    0.431
narP
Nitrate/nitrite-responsive two component signal transduction system response regulator NarP.
   
    0.404
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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