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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrbGSodium:calcium antiporter CaCA family YrbG. (316 aa)    
Predicted Functional Partners:
kdsD
Arabinose-5-phosphate isomerase KdsD.
    
 0.797
holD
DNA polymerase III psi subunit HolD.
   
    0.793
kdsC
3-deoxy-manno-octulosonate-8-phosphatase KdsC; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
    
 0.716
SO_0355
AMP-dependent synthetase and ligase family protein.
  
    0.463
SO_0353
TPR domain protein.
  
    0.456
SO_4527
10 TMS drug/metabolite efflux pump (DME) family.
   
    0.451
SO_3381
Amine oxidase.
   
    0.433
fklB-4
Peptidyl-prolyl cis-trans isomerase FklB.
  
    0.429
SO_2537
Sodium:proton antiporter CPA1 family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
 
 0.419
narP
Nitrate/nitrite-responsive two component signal transduction system response regulator NarP.
   
    0.400
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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