STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0366P-loop containing nucleotide triphosphate hydrolase. (272 aa)    
Predicted Functional Partners:
SO_1482
TonB-dependent receptor.
  
    0.710
wbfU
Galactosyl transferase WbfU.
  
  
 0.662
torD
TorA-specific chaperone TorD; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily.
  
     0.616
wza
Outer membrane polysaccharide export channel protein Wza.
  
  
 0.613
rfbc
dTDP-4-keto-L-rhamnose-35-epimerase RfbC; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.556
SO_2448
MutT/nudix family protein; Belongs to the Nudix hydrolase family.
  
    0.555
SO_0055
Tetratricopeptide repeat-containing protein.
 
     0.554
SO_1504
Membrane protein of unknown function DUF3087.
  
    0.547
wbfY
Polysaccharide biosynthesis protein epimerase/dehydratase-like WbfY.
  
  
 0.544
pseB
Bifunctional UDP GlcNAc C6 dehydratase/C5 epimerase PseB.
  
  
 0.544
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.