STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tnpA-4ISSod4 transposase TnpA_ISSod4; Required for the transposition of the insertion element. (400 aa)    
Predicted Functional Partners:
SO_2225
Carboxypeptidase-like protein.
      
 0.800
SO_4279
Tellurium ion resistance family protein.
      
 0.800
SO_1615
Inner membrane protein of unknown function DUF962.
      
 0.751
SO_1617
Protein of unknown function DUF3301.
      
 0.751
cheD2
Chemotaxis signal transduction system chemoreceptor glutamine deamidase CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
      
 0.696
SO_2123
Chemotaxis signal transduction system methyl accepting sensory transducer.
      
 0.663
SO_2117
Chemotaxis signal transduction system methyl accepting sensory transducer.
      
 0.661
SO_0377
Class I glutamine amidotransferase-like domain protein.
       0.518
rsmA
16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase RsmA; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
      
 0.518
cheY-4
Chemotaxis signal transduction system response regulator CheY.
      
 0.479
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.