Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_0379Protein of unknown function DUF45. (237 aa)    
Predicted Functional Partners:
hsdR
Type I restriction-modification system restriction endonuclease cleavage subunit HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
   
 0.958
hsdM
Type I restriction-modification system N6-adenine DNA methyltransferase HsdM.
    0.914
hsdS
Type I restriction-modification system restriction endonuclease DNA specificity subunit HsdS.
 
    0.842
SO_0381
Type I RM locus Fic family protein.
  
    0.570
hsdM-2
Type I restriction-modification system N6-adenine DNA methyltransferase HsdM.
 
     0.511
SO_1457
Type II restriction-modification system methyltransferase.
 
     0.455
SO_3975
Membrane protein PAP2 superfamily.
   
    0.421
SO_0540
Periplasmic protein of unknown function DUF2927.
  
    0.419
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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