Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hsdMType I restriction-modification system N6-adenine DNA methyltransferase HsdM. (609 aa)    
Predicted Functional Partners:
hsdS
Type I restriction-modification system restriction endonuclease DNA specificity subunit HsdS.
 
 
 0.993
hsdS-3
Type I restriction-modification system restriction endonuclease DNA specificity subunit HsdS.
 
 
 0.970
hsdR
Type I restriction-modification system restriction endonuclease cleavage subunit HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.965
hsdR-2
Type I restriction-modification system restriction endonuclease cleavage subunit HsdR.
 
 
 0.917
SO_0379
Protein of unknown function DUF45.
    0.914
potG
ABC-type putrescine uptake system ATPase component PotG; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
      
 0.868
SO_0381
Type I RM locus Fic family protein.
 
    0.867
mdtL
Chloramphenicol resistance protein MdtL.
   
  
 0.690
parB
Chromosome partitioning protein ParB; Belongs to the ParB family.
  
  
 0.671
SO_4019
P-loop containing nucleoside triphosphate hydrolase superfamily.
 
  
 0.572
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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