Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0392Predicted lipoprotein. (200 aa)    
Predicted Functional Partners:
SO_4688
Glycosyl transferase family 2.
      
 0.804
SO_3484
HAE1 family efflux pump permease component; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
      
 0.802
vmeB
Proton-coupled multidrug efflux pump permease component VmeB.
      
 0.802
SO_1882
HAE1 family efflux pump permease component; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
      
 0.663
SO_0391
Uncharacterized protein.
  
    0.511
SO_4762
Uncharacterized protein.
       0.494
cpxA
Periplasmic stress-responsive two component signal transduction system histidine kinase CpxA.
      
 0.479
SO_1692
10 TMS drug/metabolite efflux pump (DME) family.
   
    0.421
cpxR
Periplasmic stress-responsive two component signal transduction system response regulator CpxR.
   
  
 0.421
SO_0544
Two component signal transduction system histidine kinase with CHASE and PAS sensory domains.
   
  
 0.411
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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