STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0400Putative quinol monooxygenase. (94 aa)    
Predicted Functional Partners:
SO_0181
Uncharacterized protein.
  
  
 0.910
SO_0841
Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase.
   
  
 0.901
SO_3660
Sigma54-dependent transcriptional regulator with PAS sensory domain Fis family.
   
  
 0.892
SO_3662
Inner membrane 4Fe-4S ferredoxin.
      
 0.882
SO_0401
Putative NADPH-dependent quinone oxidoreductase; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.
 
    0.816
cysT
ABC-type sulfate/thiosulfate uptake system permease component 1 CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
  
 0.709
phyH
phytanoyl-CoA dioxygenase PhyH.
   
  
 0.647
SO_3656
Protein of unknown function DUF3144.
      
 0.610
SO_0402
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.575
SO_2282
Bifunctional transcriptional repressor of amino acid efflux GntR family / aminotransferase.
 
    0.505
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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